Package: fcfdr 1.0.0

fcfdr: Flexible cFDR

Provides functions to implement the Flexible cFDR (Hutchinson et al. (2021) <doi:10.1371/journal.pgen.1009853>) and Binary cFDR (Hutchinson et al. (2021) <doi:10.1101/2021.10.21.465274>) methodologies to leverage auxiliary data from arbitrary distributions, for example functional genomic data, with GWAS p-values to generate re-weighted p-values.

Authors:Anna Hutchinson [aut, cre], Chris Wallace [aut], Thomas Willis [ctb, aut], James Liley [ctb]

fcfdr_1.0.0.tar.gz
fcfdr_1.0.0.zip(r-4.5)fcfdr_1.0.0.zip(r-4.4)fcfdr_1.0.0.zip(r-4.3)
fcfdr_1.0.0.tgz(r-4.4-any)fcfdr_1.0.0.tgz(r-4.3-any)
fcfdr_1.0.0.tar.gz(r-4.5-noble)fcfdr_1.0.0.tar.gz(r-4.4-noble)
fcfdr_1.0.0.tgz(r-4.4-emscripten)fcfdr_1.0.0.tgz(r-4.3-emscripten)
fcfdr.pdf |fcfdr.html✨
fcfdr/json (API)
NEWS

# Install 'fcfdr' in R:
install.packages('fcfdr', repos = c('https://annahutch.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/annahutch/fcfdr/issues

Datasets:

On CRAN:

5.38 score 6 stars 9 scripts 196 downloads 7 exports 86 dependencies

Last updated 3 years agofrom:c2e73698a1. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 04 2024
R-4.5-winOKNov 04 2024
R-4.5-linuxOKNov 04 2024
R-4.4-winOKNov 04 2024
R-4.4-macOKNov 04 2024
R-4.3-winOKNov 04 2024
R-4.3-macOKNov 04 2024

Exports:binary_cfdrcorr_plotflexible_cfdrlog10pv_plotparameters_in_locfdrpv_plotstratified_qqplot

Dependencies:backportsbase64encbigsplinesbslibcachemcheckmatecliclustercolorspacecowplotdata.tabledeldirdigestdotCall64dplyrevaluatefansifarverfastmapfieldsfontawesomeforeignFormulafsgenericsggplot2gluegridExtragtablehexbinhighrHmischtmlTablehtmltoolshtmlwidgetsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelocfdrmagrittrmapsMASSMatrixmemoisemgcvmimemunsellnlmennetpillarpkgconfigpolyclippolyCubquadprogR6rappdirsRColorBrewerRcpprlangrmarkdownrpartrstudioapisassscalesspspamspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstringistringrtibbletidyselecttinytexutf8vctrsviridisviridisLitewithrxfunyaml

Extra Information

Rendered fromextra-information.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2022-02-07
Started: 2020-11-16

Introductory vignette

Rendered fromfcfdr-vignette.Rmdusingknitr::rmarkdownon Nov 04 2024.

Last update: 2022-02-08
Started: 2020-09-21

LDAK vignette

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Last update: 2022-02-07
Started: 2021-04-21

T1D Application

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Last update: 2022-02-08
Started: 2020-10-19